☰ Navigation Tabs
Solution structure of the Josephin domain of Ataxin-3 in complex with ubiquitin molecule.
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.1 - 0.3 mM [U-15N] protein, 0.1 -0.3 mM [U-13C; U-15N] protein, 0.1-0.3 mM protein, 0.1-0.3 mM [U-13C; U-15N; U-2H] protein 90% H2O/10% D2O 0.01 6.5 ambient 298 2 2D 1H-13C HSQC 0.1 - 0.3 mM [U-15N] protein, 0.1 -0.3 mM [U-13C; U-15N] protein, 0.1-0.3 mM protein, 0.1-0.3 mM [U-13C; U-15N; U-2H] protein 90% H2O/10% D2O 0.01 6.5 ambient 298 3 3D 1H-15N NOESY-HSQC 0.1 - 0.3 mM [U-15N] protein, 0.1 -0.3 mM [U-13C; U-15N] protein, 0.1-0.3 mM protein, 0.1-0.3 mM [U-13C; U-15N; U-2H] protein 90% H2O/10% D2O 0.01 6.5 ambient 298 4 3D 1H-13C NOESY-HSQC 0.1 - 0.3 mM [U-15N] protein, 0.1 -0.3 mM [U-13C; U-15N] protein, 0.1-0.3 mM protein, 0.1-0.3 mM [U-13C; U-15N; U-2H] protein 90% H2O/10% D2O 0.01 6.5 ambient 298 5 3D filtered 13C 15N 0.1 - 0.3 mM [U-15N] protein, 0.1 -0.3 mM [U-13C; U-15N] protein, 0.1-0.3 mM protein, 0.1-0.3 mM [U-13C; U-15N; U-2H] protein 90% H2O/10% D2O 0.01 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 800 2 Varian INOVA 600 3 Bruker AVANCE 600
NMR Refinement Method Details Software torsion angle dynamics refinement in explicit solvent ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution ARIA 2.1 Linge, O'Donoghue and Nilges 2 structure solution HADDOCK 2.0 Dominguez, Boelens, Bonvin 3 refinement HADDOCK 2.0 Dominguez, Boelens, Bonvin