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Solution Structure of a Dodecapeptide from Alpha-Synuclein Bound with Synphilin-1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H TOCSY 1 mM entity, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 mM Synphilin-1 90% H2O/10% D2O 6.5 ambient 298 2 2D 1H-1H NOESY 1 mM entity, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 mM Synphilin-1 90% H2O/10% D2O 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600
NMR Refinement Method Details Software torsion angle dynamics NMRDraw
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 250 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRDraw 2.3 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 peak picking Sparky 3.110 Goddard 3 chemical shift assignment Sparky 3.110 Goddard 4 data analysis ARIA 2.0 Linge, O'Donoghue and Nilges 5 structure solution ARIA 2.0 Linge, O'Donoghue and Nilges 6 refinement ARIA 2.0 Linge, O'Donoghue and Nilges