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Structure of globular heads of M-ficolin complexed with sialic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7
Crystal Properties Matthews coefficient Solvent content 2.39 48.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.93 α = 90 b = 72.93 β = 90 c = 124.83 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2006-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 23.71 98.9 0.05 23.56 5.6 24703
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 25 23641 1244 100 0.212 0.21 0.2102 0.24 0.2402 RANDOM 27.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.62 0.31 0.62 -0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.135 r_dihedral_angle_4_deg 17.458 r_dihedral_angle_3_deg 13.264 r_dihedral_angle_1_deg 8.88 r_scangle_it 2.072 r_scbond_it 1.378 r_angle_refined_deg 1.241 r_mcangle_it 1.105 r_mcbond_it 0.614 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.135 r_dihedral_angle_4_deg 17.458 r_dihedral_angle_3_deg 13.264 r_dihedral_angle_1_deg 8.88 r_scangle_it 2.072 r_scbond_it 1.378 r_angle_refined_deg 1.241 r_mcangle_it 1.105 r_mcbond_it 0.614 r_nbtor_refined 0.305 r_symmetry_hbond_refined 0.259 r_nbd_refined 0.199 r_symmetry_vdw_refined 0.181 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.097 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1709 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing