2JC0

CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH INHIBITOR SB655264


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
120% PEG4K, 100MM CITRATE BUFFER, PH5.0, 5MM DTT, 10% GLYCEROL
Crystal Properties
Matthews coefficientSolvent content
2.1742.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 85.74α = 90
b = 105.893β = 90
c = 126.12γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU IMAGE PLATEMIRRORSMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1227.296.50.142.575239

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT2.2205574829831000.1840.1810.248RANDOM32.06
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.521.09-0.57
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.975
r_dihedral_angle_4_deg16.352
r_dihedral_angle_3_deg15.4
r_dihedral_angle_1_deg6.354
r_scangle_it4.052
r_scbond_it2.749
r_mcangle_it1.736
r_angle_refined_deg1.705
r_mcbond_it1.12
r_nbtor_refined0.304
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.975
r_dihedral_angle_4_deg16.352
r_dihedral_angle_3_deg15.4
r_dihedral_angle_1_deg6.354
r_scangle_it4.052
r_scbond_it2.749
r_mcangle_it1.736
r_angle_refined_deg1.705
r_mcbond_it1.12
r_nbtor_refined0.304
r_nbd_refined0.216
r_symmetry_hbond_refined0.208
r_symmetry_vdw_refined0.188
r_xyhbond_nbd_refined0.166
r_chiral_restr0.114
r_bond_refined_d0.019
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8656
Nucleic Acid Atoms
Solvent Atoms639
Heterogen Atoms128

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling