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Structure of an FtsY:GDP complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OKK PDB ENTRY 1OKK
Crystallization Crystal Properties Matthews coefficient Solvent content 2.39 48.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.196 α = 90 b = 105.196 β = 90 c = 54.5 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2004-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.06 48.39 99.4 0.08 20.1 7.4 136283
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.06 2.17 100 0.44 3.9 7.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OKK 2.1 11.87 16465 895 99.5 0.211 0.207 0.2075 0.291 0.286 RANDOM 44.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.178 r_dihedral_angle_3_deg 17.822 r_dihedral_angle_4_deg 11.155 r_dihedral_angle_1_deg 5.577 r_scangle_it 3.594 r_scbond_it 2.202 r_mcangle_it 1.822 r_angle_refined_deg 1.521 r_mcbond_it 1.069 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.178 r_dihedral_angle_3_deg 17.822 r_dihedral_angle_4_deg 11.155 r_dihedral_angle_1_deg 5.577 r_scangle_it 3.594 r_scbond_it 2.202 r_mcangle_it 1.822 r_angle_refined_deg 1.521 r_mcbond_it 1.069 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.227 r_nbd_refined 0.217 r_xyhbond_nbd_refined 0.177 r_symmetry_hbond_refined 0.119 r_chiral_restr 0.1 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2063 Nucleic Acid Atoms Solvent Atoms 144 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing