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Structure of catalytic CPx-ATPase domain CopB-B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 20% PEG-6000 200 MM AMMONIUM SULFATE 10 MM DTT 100 MM SODIUM CACODYLATE, PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.46 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.53 α = 90 b = 53.8 β = 97.08 c = 73.96 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2004-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 40 99.7 0.09 14.1 7 17386
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.7 100 0.44 4.6 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.6 40 15646 1739 99.7 0.224 0.22 0.2205 0.256 0.255 RANDOM 52.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.49 0.28 -1.24 -1.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.19 r_dihedral_angle_3_deg 17.941 r_dihedral_angle_4_deg 13.908 r_dihedral_angle_1_deg 6.912 r_scangle_it 3.839 r_scbond_it 2.649 r_mcangle_it 1.931 r_angle_refined_deg 1.848 r_mcbond_it 1.478 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.19 r_dihedral_angle_3_deg 17.941 r_dihedral_angle_4_deg 13.908 r_dihedral_angle_1_deg 6.912 r_scangle_it 3.839 r_scbond_it 2.649 r_mcangle_it 1.931 r_angle_refined_deg 1.848 r_mcbond_it 1.478 r_nbtor_refined 0.313 r_symmetry_vdw_refined 0.294 r_nbd_refined 0.269 r_chiral_restr 0.237 r_xyhbond_nbd_refined 0.19 r_symmetry_hbond_refined 0.103 r_bond_refined_d 0.02 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3804 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SOLVE phasing