2IWF

Resting form of pink nitrous oxide reductase from Achromobacter Cycloclastes


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
1.9235.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.292α = 90
b = 118.18β = 90
c = 131.135γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX10.1SRSPX10.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.865095.90.137.93.6881912

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT1.863587784438494.90.2090.2090.271RANDOM20.11
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.47-0.260.73
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.854
r_dihedral_angle_4_deg16.243
r_dihedral_angle_3_deg14.524
r_dihedral_angle_1_deg8.205
r_scangle_it2.391
r_scbond_it1.632
r_angle_refined_deg1.529
r_mcangle_it0.965
r_angle_other_deg0.859
r_mcbond_it0.601
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.854
r_dihedral_angle_4_deg16.243
r_dihedral_angle_3_deg14.524
r_dihedral_angle_1_deg8.205
r_scangle_it2.391
r_scbond_it1.632
r_angle_refined_deg1.529
r_mcangle_it0.965
r_angle_other_deg0.859
r_mcbond_it0.601
r_symmetry_hbond_refined0.258
r_nbd_refined0.205
r_nbd_other0.201
r_symmetry_vdw_other0.196
r_xyhbond_nbd_refined0.182
r_nbtor_refined0.177
r_symmetry_vdw_refined0.117
r_chiral_restr0.091
r_nbtor_other0.085
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9260
Nucleic Acid Atoms
Solvent Atoms765
Heterogen Atoms34

Software

Software
Software NamePurpose
REFMACrefinement