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Crystal structure of the C-terminal PH domain of pleckstrin in complex with D-myo-Ins(1,2,3,5,6)P5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 297.15 0.1 M Bis-Tris pH 6.5
28% PEG 2000 MME
, VAPOR DIFFUSION, HANGING DROP, temperature 297.15K
Crystal Properties Matthews coefficient Solvent content 1.9 35.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.15 α = 90 b = 47.7 β = 90 c = 64.06 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315 2006-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.0 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 32.03 97.7 0.044 25.1 12.21 22313 21808 3 3 15.32
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.35 1.4 95.9 0.454 3.9 7.17 2202
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.35 28.7 20722 20722 1084 97.73 0.17902 0.17902 0.17864 0.2671 0.20833 0.2893 RANDOM 23.158
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 -0.68 0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.874 r_dihedral_angle_3_deg 15.715 r_dihedral_angle_4_deg 7.863 r_dihedral_angle_1_deg 6.564 r_scangle_it 5.4 r_scbond_it 3.807 r_angle_refined_deg 3.27 r_mcangle_it 2.383 r_mcbond_it 2.296 r_nbtor_refined 0.328
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.874 r_dihedral_angle_3_deg 15.715 r_dihedral_angle_4_deg 7.863 r_dihedral_angle_1_deg 6.564 r_scangle_it 5.4 r_scbond_it 3.807 r_angle_refined_deg 3.27 r_mcangle_it 2.383 r_mcbond_it 2.296 r_nbtor_refined 0.328 r_symmetry_vdw_refined 0.278 r_nbd_refined 0.272 r_symmetry_hbond_refined 0.224 r_chiral_restr 0.216 r_xyhbond_nbd_refined 0.187 r_bond_refined_d 0.034 r_gen_planes_refined 0.015
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 843 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement CBASS data collection d*TREK data reduction d*TREK data scaling MOLREP phasing