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Bovine Odorant Binding Protein deswapped triple mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1G85
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 26% (W/V) PEG 8000, 200 mM Ammonium Sulfate and 10 mM Na Acetate (pH 4.8), protein at 7.5 mg/ml, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.31 46.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.501 α = 90 b = 83.501 β = 90 c = 48.964 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-06-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 57 99.9 0.089 5.2 21290 21290
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.7 99.8 0.28 2 20
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1G85 1.65 30 21260 20168 1091 99.88 0.18589 0.18589 0.18451 0.21224 0.2187 RANDOM 17.493
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.89 -0.89 1.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.411 r_dihedral_angle_4_deg 17.919 r_dihedral_angle_3_deg 14.954 r_dihedral_angle_1_deg 5.871 r_scangle_it 3.596 r_scbond_it 2.875 r_mcangle_it 1.662 r_mcbond_it 1.57 r_angle_refined_deg 1.317 r_angle_other_deg 0.785
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.411 r_dihedral_angle_4_deg 17.919 r_dihedral_angle_3_deg 14.954 r_dihedral_angle_1_deg 5.871 r_scangle_it 3.596 r_scbond_it 2.875 r_mcangle_it 1.662 r_mcbond_it 1.57 r_angle_refined_deg 1.317 r_angle_other_deg 0.785 r_xyhbond_nbd_other 0.319 r_symmetry_vdw_refined 0.228 r_symmetry_vdw_other 0.218 r_mcbond_other 0.215 r_symmetry_hbond_refined 0.211 r_nbd_other 0.21 r_nbd_refined 0.203 r_nbtor_refined 0.171 r_xyhbond_nbd_refined 0.169 r_chiral_restr 0.1 r_nbtor_other 0.082 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1205 Nucleic Acid Atoms Solvent Atoms 131 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALA data scaling AMoRE phasing