2HIN

Structure of N15 Cro at 1.05 A: an ortholog of lambda Cro with a completely different but equally effective dimerization mechanism


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52930.1 M Tris, 1.8 M ammonium sulfate, 17.5 mg/mL protein, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.7630.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 25.579α = 90
b = 49.512β = 91.75
c = 43.768γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCDflat collimating mirror double crystal monochromator toroid focusing mirror2006-05-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.9795SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.0525.57980.0749.34.19498884988814.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.051.0996.10.4062.13.634842

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONACORN (DDM)THROUGHOUT10-RESIDUE ALPHA-HELIX1.0524.754988749887251298.010.160.160.160.173RANDOM11.685
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.010.18-0.050.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.839
r_dihedral_angle_4_deg13.888
r_dihedral_angle_3_deg12.453
r_sphericity_free6.297
r_dihedral_angle_1_deg5.588
r_scangle_it4.358
r_scbond_it3.399
r_sphericity_bonded3.036
r_mcangle_it2.161
r_rigid_bond_restr1.815
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.839
r_dihedral_angle_4_deg13.888
r_dihedral_angle_3_deg12.453
r_sphericity_free6.297
r_dihedral_angle_1_deg5.588
r_scangle_it4.358
r_scbond_it3.399
r_sphericity_bonded3.036
r_mcangle_it2.161
r_rigid_bond_restr1.815
r_mcbond_it1.761
r_angle_refined_deg1.39
r_angle_other_deg0.893
r_mcbond_other0.756
r_symmetry_vdw_refined0.268
r_symmetry_vdw_other0.255
r_nbd_refined0.223
r_nbtor_refined0.183
r_nbd_other0.179
r_symmetry_hbond_refined0.158
r_xyhbond_nbd_refined0.146
r_nbtor_other0.086
r_chiral_restr0.084
r_bond_refined_d0.011
r_gen_planes_refined0.007
r_gen_planes_other0.004
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1275
Nucleic Acid Atoms
Solvent Atoms154
Heterogen Atoms10

Software

Software
Software NamePurpose
d*TREKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
d*TREKdata reduction
ACORNphasing