2HDL
Solution structure of Brak/CXCL14
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1 mM CXCL14 U-15N, 13C; 100mM phosphate buffer, 150mM NaCl,95% H2O, 5% D2O | 95% H2O/5% D2O | 300 mM | 6.5 | AMBIENT | 298 | |
2 | 3D_13C-separated_NOESY | 1 mM CXCL14 U-15N, 13C; 100mM phosphate buffer, 150mM NaCl,95% H2O, 5% D2O | 95% H2O/5% D2O | 300 mM | 6.5 | AMBIENT | 298 | |
3 | 3D_13C-separated_NOESY (AROMATIC) | 1 mM CXCL14 U-15N, 13C; 100mM phosphate buffer, 150mM NaCl,95% H2O, 5% D2O | 95% H2O/5% D2O | 300 mM | 6.5 | AMBIENT | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
NMR Refinement | ||
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Method | Details | Software |
AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVEN | STRUCTURES ARE BASED ON A TOTAL OF 894 NOE CONSTRAINTS ( 366 INTRA, 186 SEQUENTIAL, 133 MEDIUM and 209 LONG RANGE CONSTRAINTS) AND 97 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | ALL TRIPLE-RESONANCE AND NOESY SPECTRA WERE ACQUIRED USING A CRYOGENIC PROBE |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.5 | |
2 | processing | NMRPipe | 2004 | Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J., Bax, A. |
3 | data analysis | SPSCAN | 1.1.0 | Glaser, R.W. |
4 | data analysis | XEASY | 1.3 | Bartels, C, Xia, T.-H., Billeter, M., Guntert, P., Wuthrich, K. |
5 | data analysis | GARANT | 2.1 | Bartels, C., Billeter, M., Guntert, P., Wuthrich, K. |
6 | structure solution | CYANA | 2.1 | Herrmann, T., Guntert, P., Wuthrich, K. |
7 | refinement | XPLOR-NIH | 2.9.3 | Schwieters, C.D., Kuszewski, J.J, Tjandra, N., Clore, G.M. |