☰ Navigation Tabs
Crystal structure of Azurin Phe114Pro mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4AZU 4AZU - chain A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 293 25% PEG1500, 100mM MMT buffer, pH 4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.01 38.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.35 α = 90 b = 47.81 β = 90 c = 132.52 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV Osmic 'blue' 2005-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 38.8 98.6 0.047 27.4 6.9 33091 19.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.55 1.63 92.7 0.204 4.8 4.5 4436
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4AZU - chain A 1.6 38.8 28811 1533 99.38 0.14445 0.14445 0.14202 0.19028 0.219 RANDOM 14.533
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 0.45 -0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.044 r_dihedral_angle_3_deg 11.266 r_sphericity_free 8.24 r_dihedral_angle_4_deg 7.714 r_dihedral_angle_1_deg 6.798 r_scangle_it 4.438 r_sphericity_bonded 3.573 r_scbond_it 3.237 r_mcangle_it 2.122 r_mcbond_it 1.737
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.044 r_dihedral_angle_3_deg 11.266 r_sphericity_free 8.24 r_dihedral_angle_4_deg 7.714 r_dihedral_angle_1_deg 6.798 r_scangle_it 4.438 r_sphericity_bonded 3.573 r_scbond_it 3.237 r_mcangle_it 2.122 r_mcbond_it 1.737 r_rigid_bond_restr 1.679 r_angle_refined_deg 1.597 r_angle_other_deg 0.835 r_mcbond_other 0.689 r_nbd_refined 0.211 r_symmetry_vdw_other 0.188 r_nbd_other 0.184 r_symmetry_vdw_refined 0.178 r_nbtor_refined 0.173 r_symmetry_hbond_refined 0.153 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.101 r_nbtor_other 0.088 r_metal_ion_refined 0.051 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1980 Nucleic Acid Atoms Solvent Atoms 358 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing