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Crystal structure of the human RhoC-GppNHp complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z2C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.4 291.15 30% PEG 8000, 0.2M Sodium Acetate,1.2% Inositol, 0.1M Sodium Cacodylate, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 291.15K
Crystal Properties Matthews coefficient Solvent content 2.21 44.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.092 α = 90 b = 75.645 β = 90 c = 82.903 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-11-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F1 CHESS F1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 82.903 95 0.085 0.085 4.3 5 77234 75377 3 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 95 96.2 0.508 0.508 1.2 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1Z2C 1.4 8 75014 3768 94.35 0.198 0.19804 0.197 0.1941 0.219 0.2153 RANDOM 15.087
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.26 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.996 r_dihedral_angle_4_deg 19.318 r_dihedral_angle_3_deg 11.72 r_dihedral_angle_1_deg 5.128 r_scangle_it 2.411 r_scbond_it 1.626 r_angle_refined_deg 1.36 r_mcangle_it 1.101 r_mcbond_it 0.695 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.996 r_dihedral_angle_4_deg 19.318 r_dihedral_angle_3_deg 11.72 r_dihedral_angle_1_deg 5.128 r_scangle_it 2.411 r_scbond_it 1.626 r_angle_refined_deg 1.36 r_mcangle_it 1.101 r_mcbond_it 0.695 r_nbtor_refined 0.315 r_nbd_refined 0.204 r_symmetry_vdw_refined 0.176 r_symmetry_hbond_refined 0.172 r_xyhbond_nbd_refined 0.117 r_chiral_restr 0.085 r_metal_ion_refined 0.04 r_bond_refined_d 0.009 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2935 Nucleic Acid Atoms Solvent Atoms 502 Heterogen Atoms 66
Software Software Software Name Purpose SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data reduction CCP4 data scaling