2FYH
Solution structure of the 2'-5' RNA ligase-like protein from Pyrococcus furiosus
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1mM 13C/15N-Protein; 1mM HCl; 200mM NaCl; 90% H2O, 10% D2O | 90% H2O/10% D2O | 200mM | 4.7 | ambient | 313 | |
2 | 3D_13C-separated_NOESY | 1mM 13C/15N-Protein; 1mM HCl; 200mM NaCl; 90% H2O, 10% D2O | 90% H2O/10% D2O | 200mM | 4.7 | ambient | 313 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | Avance | 800 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics, simulated annealing | A total of 3615 NOE and 220 dihedral angle and 10 hydrogen bond restraints were obtained from the NMR data. | XWINNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | The structure was determined using triple-resonance NMR spectroscopy. |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XWINNMR | 3.5 | Bruker |
2 | data analysis | NMRPipe | 200031121 | Delaglio, F. |
3 | data analysis | NMRVIEW | 5.0.4 | Johnson, B. |
4 | data analysis | KUJIRA | 0.9295 | Kobayashi, N. |
5 | structure solution | CYANA | 2.0.17 | Guntert, P. |
6 | refinement | CYANA | 2.0.17 | Guntert, P. |