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Making Protein-Protein Interactions Drugable: Discovery of Low-Molecular-Weight Ligands for the AF6 PDZ Domain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_15N-separated_NOESY 1.5 mM PDZ domain U-15N, 20mM phosphate buffer, 50mM Sodium chloride, 90%H2O, 10% D2O 90% H2O/10% D2O 20 mM Phosphate, 50 mM NaCl 6.5 Ambient 295 2 3D_13C-separated_NOESY 1.5 mM PDZ domain U-15N, 13C, 1.5 mM 5f, 20mM phosphate buffer, 50mM Sodium chloride 100% D2O 20 mM Phosphate, 50 mM NaCl 6.5 Ambient 295
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 600 2 Bruker DMX 750
NMR Refinement Method Details Software Torsional angle dynamics DIANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution DIANA 1.0.6 Guentert, P. 2 collection XwinNMR 3.5 Bruker 3 processing XwinNMR 3.5 Bruker 4 data analysis Sparky 3.1 Goddard and Kneller 5 refinement DIANA 1.0.6 Guentert, P.