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Crystal Structure of human Rad GTPase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JAH 1JAH, 1GUA, 3RAP, 1U90, 1UAD experimental model PDB 1GUA 1JAH, 1GUA, 3RAP, 1U90, 1UAD experimental model PDB 3RAP 1JAH, 1GUA, 3RAP, 1U90, 1UAD experimental model PDB 1U90 1JAH, 1GUA, 3RAP, 1U90, 1UAD experimental model PDB 1UAD 1JAH, 1GUA, 3RAP, 1U90, 1UAD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 25% PEG3350, 0.1M MOPS, 25mM Magnesium chloride, 10mM DTT, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.12 42.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.163 α = 90 b = 58.608 β = 97.98 c = 53.44 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 94.6 28220 23.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1JAH, 1GUA, 3RAP, 1U90, 1UAD 1.8 34.64 26737 2649 89.9 0.214 0.214 0.2146 0.24 0.2402 RANDOM 40.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.69 -0.34 1.06 -6.75
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.8 c_scangle_it 6.2 c_scbond_it 4.36 c_mcangle_it 4.32 c_mcbond_it 3.28 c_angle_deg 1.4 c_improper_angle_d 0.76 c_bond_d 0.009 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.8 c_scangle_it 6.2 c_scbond_it 4.36 c_mcangle_it 4.32 c_mcbond_it 3.28 c_angle_deg 1.4 c_improper_angle_d 0.76 c_bond_d 0.009 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2133 Nucleic Acid Atoms Solvent Atoms 83 Heterogen Atoms 58
Software Software Software Name Purpose CNS refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing