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Solution Structure of the Ubiquitin-Associated Domain of Human BMSC-UbP and its Complex with Ubiquitin
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
titration of sample 1 with sample 2
1mM HGB1-UBA
20mM phosphate, 100mM NaCl, pH6.5
6.5
ambient
298
2
titration of sample 2 with sample 1
1mM Ubiquitin
20mM phosphate, 100mM NaCl, pH6.5
6.5
ambient
298
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Varian
INOVA
600
NMR Refinement
Method
Details
Software
molecular dynamics
Based on NMR titration data, the complex structrue is constructed using the HADDOCK program.
HADDOCK
NMR Ensemble Information
Conformer Selection Criteria
structures with the lowest energy
Conformers Calculated Total Number
200
Conformers Submitted Total Number
10
Representative Model
1 (lowest energy)
Additional NMR Experimental Information
Details
This complex model is constructed by using the HADDOCK program which employs the Ambiguous Interaction Restraints (AIR) that are obtained from the reciprocal NMR titration of the two samples.
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
refinement
HADDOCK
1.3
Cyril Dominguez, Rolf Boelens and Alexandre M.J.J. Bonvin
2
structure solution
HADDOCK
1.3
Cyril Dominguez, Rolf Boelens and Alexandre M.J.J. Bonvin