X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP600 NL SITTING DROPS 0.05 M CACL2, 10% ETHYLENE-GLYCOL, 0.1 M TRIS PH 8, 20% PEG6000
Crystal Properties
Matthews coefficientSolvent content
358.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 126.963α = 90
b = 126.963β = 90
c = 490.497γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMIRRORS2005-08-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1359.0999.70.0911.164.98929712
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
133.197.60.52.224.84

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2BP13164.488149462899.80.240.2390.253RANDOM46.3
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.780.891.78-2.67
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.41
r_dihedral_angle_4_deg15.045
r_dihedral_angle_3_deg14.506
r_dihedral_angle_1_deg5.526
r_scangle_it1.347
r_angle_refined_deg1.158
r_angle_other_deg1.15
r_scbond_it0.808
r_mcangle_it0.547
r_mcbond_it0.327
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.41
r_dihedral_angle_4_deg15.045
r_dihedral_angle_3_deg14.506
r_dihedral_angle_1_deg5.526
r_scangle_it1.347
r_angle_refined_deg1.158
r_angle_other_deg1.15
r_scbond_it0.808
r_mcangle_it0.547
r_mcbond_it0.327
r_symmetry_vdw_other0.276
r_symmetry_vdw_refined0.245
r_nbd_refined0.213
r_nbtor_refined0.186
r_nbd_other0.183
r_xyhbond_nbd_refined0.144
r_symmetry_hbond_refined0.12
r_nbtor_other0.085
r_chiral_restr0.056
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.002
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms26897
Nucleic Acid Atoms
Solvent Atoms12
Heterogen Atoms532

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing