☰ Navigation Tabs
Insights Into Crossreactivity in Human Allorecognition: The Structure of HLA-B35011 Presenting an Epitope derived from Cytochrome P450.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A1N PDB ENTRY 1A1N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 0.105M AMMONIUM ACETATE, 0.0525M TRI-SODIUM CITRATE DIHYDRATE PH 5.6 AND 15.75% W/V PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.6 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.32 α = 90 b = 82.25 β = 90 c = 109.85 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2001-05-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 20 100 0.07 23.9 7.8 47620 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.81 100 0.58 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1A1N 1.75 19.62 44265 1852 97 0.198 0.197 0.2037 0.227 0.2307 RANDOM 15.58
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.73 -0.27 1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.238 r_dihedral_angle_4_deg 17.799 r_dihedral_angle_3_deg 12.737 r_dihedral_angle_1_deg 6.01 r_scangle_it 3.045 r_scbond_it 2.134 r_angle_refined_deg 1.272 r_mcangle_it 1.269 r_mcbond_it 1.184 r_angle_other_deg 0.866
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.238 r_dihedral_angle_4_deg 17.799 r_dihedral_angle_3_deg 12.737 r_dihedral_angle_1_deg 6.01 r_scangle_it 3.045 r_scbond_it 2.134 r_angle_refined_deg 1.272 r_mcangle_it 1.269 r_mcbond_it 1.184 r_angle_other_deg 0.866 r_symmetry_vdw_other 0.282 r_nbd_refined 0.213 r_nbd_other 0.205 r_nbtor_refined 0.178 r_symmetry_hbond_refined 0.13 r_xyhbond_nbd_refined 0.129 r_symmetry_vdw_refined 0.096 r_chiral_restr 0.082 r_nbtor_other 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3156 Nucleic Acid Atoms Solvent Atoms 325 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing