2BVO

Structures of Three HIV-1 HLA-B5703-Peptide Complexes and Identification of Related HLAs Potentially Associated with Long-Term Non-Progression


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.2143.88

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.589α = 90
b = 81.769β = 90
c = 110.137γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX14.2SRSPX14.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
123099.30.018323210.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT1.6565.6552941282899.80.1950.1930.235RANDOM17.27
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.03-0.260.28
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.435
r_dihedral_angle_4_deg18.152
r_dihedral_angle_3_deg14.437
r_dihedral_angle_1_deg5.839
r_scangle_it3.653
r_scbond_it2.353
r_mcangle_it1.511
r_angle_refined_deg1.369
r_mcbond_it0.967
r_nbtor_refined0.308
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.435
r_dihedral_angle_4_deg18.152
r_dihedral_angle_3_deg14.437
r_dihedral_angle_1_deg5.839
r_scangle_it3.653
r_scbond_it2.353
r_mcangle_it1.511
r_angle_refined_deg1.369
r_mcbond_it0.967
r_nbtor_refined0.308
r_nbd_refined0.233
r_symmetry_hbond_refined0.207
r_symmetry_vdw_refined0.167
r_xyhbond_nbd_refined0.161
r_chiral_restr0.097
r_bond_refined_d0.011
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3145
Nucleic Acid Atoms
Solvent Atoms538
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement