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Isopenicillin N synthase C-terminal truncation mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BK0 PDB ENTRY 1BK0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 1.0M LITHIUM SULPHATE, 76MM TRIS/HCL (PH8.5), pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.32 46.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.149 α = 90 b = 71.126 β = 90 c = 100.991 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH TOROIDAL MIRROR 1998-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 34.46 98.4 0.06 14.6 3.8 82674 10
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 97.7 0.31 4.3 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BK0 1.3 58.12 79248 3297 98 0.14 0.139 0.1539 0.164 0.1777 RANDOM 15.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.24 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.409 r_dihedral_angle_4_deg 16.415 r_dihedral_angle_3_deg 10.906 r_dihedral_angle_1_deg 6.511 r_scangle_it 4.262 r_scbond_it 2.927 r_angle_refined_deg 2.246 r_mcangle_it 1.888 r_mcbond_it 1.304 r_angle_other_deg 1.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.409 r_dihedral_angle_4_deg 16.415 r_dihedral_angle_3_deg 10.906 r_dihedral_angle_1_deg 6.511 r_scangle_it 4.262 r_scbond_it 2.927 r_angle_refined_deg 2.246 r_mcangle_it 1.888 r_mcbond_it 1.304 r_angle_other_deg 1.078 r_symmetry_hbond_refined 0.262 r_symmetry_vdw_other 0.241 r_nbd_refined 0.237 r_xyhbond_nbd_refined 0.225 r_nbtor_refined 0.189 r_nbd_other 0.184 r_chiral_restr 0.138 r_symmetry_vdw_refined 0.104 r_nbtor_other 0.09 r_bond_refined_d 0.026 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2571 Nucleic Acid Atoms Solvent Atoms 546 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling