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Human Nuclear Receptor-Ligand Complex 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 vapour diffusion, hanging drop 8.5 291 5% PEG 8000, 200mM KCl, 40mM bis-tris-propane pH 8.5, 2.5% 1,2-propanediol, 0.5% n-heptyl-B-D-glucopyranoside, 1mM EDTA, 10mM DTT, vapour diffusion, hanging drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.78 55.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.776 α = 90 b = 92.084 β = 97 c = 95.017 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 65 CCD ADSC QUANTUM 4r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.939261 ESRF BM14
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 94.49 42441 44692 2251 97.29 0.199 0.199 0.197 0.2008 0.249 RANDOM 28.494
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.6 2.09 -1.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.279 r_dihedral_angle_4_deg 21.133 r_dihedral_angle_3_deg 17.047 r_dihedral_angle_1_deg 5.313 r_scangle_it 2.63 r_scbond_it 1.622 r_angle_refined_deg 1.329 r_mcangle_it 1.123 r_mcbond_it 0.672 r_symmetry_hbond_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.279 r_dihedral_angle_4_deg 21.133 r_dihedral_angle_3_deg 17.047 r_dihedral_angle_1_deg 5.313 r_scangle_it 2.63 r_scbond_it 1.622 r_angle_refined_deg 1.329 r_mcangle_it 1.123 r_mcbond_it 0.672 r_symmetry_hbond_refined 0.316 r_symmetry_vdw_refined 0.315 r_nbtor_refined 0.299 r_nbd_refined 0.208 r_metal_ion_refined 0.163 r_xyhbond_nbd_refined 0.157 r_symmetry_metal_ion_refined 0.143 r_chiral_restr 0.097 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4198 Nucleic Acid Atoms Solvent Atoms 519 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction CCP4 data scaling