2ASU

Crystal Structure of the beta-chain of HGFl/MSP


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION6.12921.4 M NaH2PO4, 0.93 M K2HPO4, CAPS pH 10.5, Li2SO4 0.1 M, pH 6.1, VAPOR DIFFUSION, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
2.4349.28

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.676α = 90
b = 75.848β = 90
c = 47.973γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2003-09-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID130.979ESRFID13

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.855098.40.060.0614.15.8239202392021.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.851.8998.30.4160.416

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1BUI1.85502266122661122197.820.19990.19990.198020.23678RANDOM25.129
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.91.08-0.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.169
r_scangle_it5.502
r_mcangle_it4.352
r_scbond_it3.853
r_mcbond_it3.36
r_angle_refined_deg1.599
r_angle_other_deg0.855
r_symmetry_vdw_other0.29
r_nbd_other0.241
r_xyhbond_nbd_refined0.219
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.169
r_scangle_it5.502
r_mcangle_it4.352
r_scbond_it3.853
r_mcbond_it3.36
r_angle_refined_deg1.599
r_angle_other_deg0.855
r_symmetry_vdw_other0.29
r_nbd_other0.241
r_xyhbond_nbd_refined0.219
r_nbd_refined0.186
r_symmetry_hbond_refined0.156
r_chiral_restr0.099
r_nbtor_other0.083
r_symmetry_vdw_refined0.041
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_gen_planes_other0.003
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1730
Nucleic Acid Atoms
Solvent Atoms155
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALEPACKdata scaling
AMoREphasing