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Structure of Rabbit Actin In Complex With Reidispongiolide C
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ASM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 50mM MES, pH 6.5, 12% methyl ether poly(ethylene glycol) 5000, 40mM MgCl2, 10% ethylene glycol, 1mM TCEP, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.08 45.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 170.402 α = 90 b = 54.689 β = 95.81 c = 40.872 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 Rosenbaum-Rock monochromators and mirrors 2004-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9184 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 50 99.4 0.039 32.3 3.6 45723 23.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.64 1.7 96.3 0.226 7.3 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2ASM 1.64 35 45707 43419 2304 99.31 0.177 0.16448 0.16299 0.1751 0.19273 0.2054 RANDOM 14.817
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.87 -0.48 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.425 r_dihedral_angle_4_deg 18.691 r_dihedral_angle_3_deg 14.512 r_dihedral_angle_1_deg 5.295 r_scangle_it 2.949 r_angle_other_deg 2.17 r_scbond_it 1.971 r_angle_refined_deg 1.492 r_mcangle_it 1.225 r_mcbond_it 0.762
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.425 r_dihedral_angle_4_deg 18.691 r_dihedral_angle_3_deg 14.512 r_dihedral_angle_1_deg 5.295 r_scangle_it 2.949 r_angle_other_deg 2.17 r_scbond_it 1.971 r_angle_refined_deg 1.492 r_mcangle_it 1.225 r_mcbond_it 0.762 r_symmetry_hbond_refined 0.508 r_symmetry_vdw_refined 0.258 r_nbd_refined 0.216 r_symmetry_vdw_other 0.206 r_xyhbond_nbd_refined 0.187 r_nbd_other 0.184 r_nbtor_refined 0.178 r_mcbond_other 0.153 r_chiral_restr 0.111 r_nbtor_other 0.088 r_metal_ion_refined 0.06 r_xyhbond_nbd_other 0.037 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2774 Nucleic Acid Atoms Solvent Atoms 361 Heterogen Atoms 116
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing