X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.5298Ammonium sulphate, Mes, PEG monomethylether 5000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
2.243

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.092α = 106.05
b = 62.055β = 105.95
c = 74.042γ = 100.97
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS2005-07-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E SUPERBRIGHT

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8466.6789.78487976176
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.841.952.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.8466.6774714146489.750.167970.167970.166910.22417RANDOM26.061
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.37-0.090.27-0.360.320.27
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.364
r_dihedral_angle_4_deg17.168
r_dihedral_angle_3_deg13.25
r_dihedral_angle_1_deg6.242
r_scangle_it3.505
r_scbond_it2.504
r_angle_refined_deg1.744
r_mcangle_it1.422
r_mcbond_it1.018
r_angle_other_deg0.925
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.364
r_dihedral_angle_4_deg17.168
r_dihedral_angle_3_deg13.25
r_dihedral_angle_1_deg6.242
r_scangle_it3.505
r_scbond_it2.504
r_angle_refined_deg1.744
r_mcangle_it1.422
r_mcbond_it1.018
r_angle_other_deg0.925
r_mcbond_other0.326
r_symmetry_vdw_other0.29
r_nbd_refined0.213
r_nbd_other0.193
r_symmetry_hbond_refined0.187
r_xyhbond_nbd_refined0.178
r_nbtor_refined0.175
r_symmetry_vdw_refined0.159
r_chiral_restr0.106
r_nbtor_other0.088
r_bond_refined_d0.022
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7365
Nucleic Acid Atoms
Solvent Atoms868
Heterogen Atoms196

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
PHASERphasing