29UR | pdb_000029ur

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2OZU

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.5	293	PEG 3350, sodium acetate, HEPES; glycerol as cryo protectant

Crystal Properties
Matthews coefficient	Solvent content
1.97	37.52

Symmetry
Space Group	P 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M-F		2018-02-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	BESSY BEAMLINE 14.1	0.9184	BESSY	14.1

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.78	43.27	93.5	0.133	0.156	0.993	7.5	3.6		11480			59.9

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.78	2.95	90		1.093	1.283	0.651	0.99	3.4

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.784	43.27	11476	574	93.453	0.28	0.2778	0.2779	0.3286	0.3284	70.431

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.461	-2.48	-1.046	1.435	-1.12	2.244

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	28.443
r_dihedral_angle_3_deg	15.58
r_dihedral_angle_4_deg	11.053
r_dihedral_angle_1_deg	4.927
r_lrange_it	2.888
r_lrange_other	2.877
r_angle_refined_deg	1.149
r_angle_other_deg	0.967
r_mcangle_it	0.69
r_mcangle_other	0.69

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	28.443
r_dihedral_angle_3_deg	15.58
r_dihedral_angle_4_deg	11.053
r_dihedral_angle_1_deg	4.927
r_lrange_it	2.888
r_lrange_other	2.877
r_angle_refined_deg	1.149
r_angle_other_deg	0.967
r_mcangle_it	0.69
r_mcangle_other	0.69
r_scangle_it	0.61
r_scangle_other	0.61
r_mcbond_it	0.373
r_mcbond_other	0.373
r_scbond_it	0.346
r_scbond_other	0.346
r_symmetry_xyhbond_nbd_refined	0.168
r_nbtor_refined	0.158
r_nbd_other	0.154
r_symmetry_nbd_other	0.151
r_nbd_refined	0.145
r_symmetry_nbd_refined	0.095
r_xyhbond_nbd_refined	0.094
r_ncsr_local_group_1	0.091
r_chiral_restr_other	0.072
r_symmetry_nbtor_other	0.071
r_chiral_restr	0.034
r_bond_refined_d	0.002
r_gen_planes_refined	0.002
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4412
Nucleic Acid Atoms
Solvent Atoms	46
Heterogen Atoms	80

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.