☰ Navigation Tabs
Crystal structure of the human galectin-7 in complex with p-Methoxyphenyl 3-O-toluensulfonyl-beta-D- galactopyranoside
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4GAL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 50 mM Bis-Tris propane, pH 7.0, 13% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.05 39.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.224 α = 90 b = 53.27 β = 94.22 c = 72.32 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2025-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 29.88 97.02 0.995 9.03 4.6 38138
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.968 0.683
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 29.88 36267 1865 97.08 0.23477 0.23276 0.2387 0.27437 0.2811 RANDOM 29.441
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 0.37 -1.76 1.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.557 r_dihedral_angle_1_deg 7.648 r_long_range_B_refined 6.68 r_long_range_B_other 6.672 r_dihedral_angle_2_deg 6.176 r_scangle_other 4.545 r_mcangle_it 3.623 r_mcangle_other 3.623 r_scbond_it 2.874 r_scbond_other 2.873
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.557 r_dihedral_angle_1_deg 7.648 r_long_range_B_refined 6.68 r_long_range_B_other 6.672 r_dihedral_angle_2_deg 6.176 r_scangle_other 4.545 r_mcangle_it 3.623 r_mcangle_other 3.623 r_scbond_it 2.874 r_scbond_other 2.873 r_mcbond_it 2.359 r_mcbond_other 2.359 r_angle_refined_deg 1.491 r_angle_other_deg 0.496 r_chiral_restr 0.067 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4187 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing PDB_EXTRACT data extraction