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Crystal structure of bluefin tuna carbonmonoxy-hemoglobin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH METHOD 7.5 293 PEG 2000, sodium phosphate, pH 7.5, BATCH METHOD, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.59 52.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.016 α = 90 b = 102.541 β = 90 c = 108.451 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44B2 1.0000 SPring-8 BL44B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 89.1 0.036 2.9 40369
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 64.7 0.141
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 20 38274 2013 100 0.20733 0.20439 0.26429 RANDOM 30.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.87 -0.51 -1.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.928 r_scangle_it 5.25 r_scbond_it 3.597 r_angle_refined_deg 2.34 r_mcangle_it 2.171 r_mcbond_it 1.27 r_symmetry_vdw_refined 0.269 r_nbd_refined 0.237 r_chiral_restr 0.193 r_xyhbond_nbd_refined 0.167
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.928 r_scangle_it 5.25 r_scbond_it 3.597 r_angle_refined_deg 2.34 r_mcangle_it 2.171 r_mcbond_it 1.27 r_symmetry_vdw_refined 0.269 r_nbd_refined 0.237 r_chiral_restr 0.193 r_xyhbond_nbd_refined 0.167 r_symmetry_hbond_refined 0.085 r_bond_refined_d 0.029 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4376 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms 180
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing