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X-ray structure of homo sapiens protein FLJ36880
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NR9 SWISS MODEL (PDB ENTRIES 1NR9 and 1GTT) experimental model PDB 1GTT SWISS MODEL (PDB ENTRIES 1NR9 and 1GTT)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 PEG4000, Magnesium chloride, Na HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.57 51.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.792 α = 90 b = 77.239 β = 90 c = 114.195 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 2003-09-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9083 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 91 0.071 0.071 21.2 5.7 21466 21327
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.25 60.8 0.329 0.329 3.4 922
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT SWISS MODEL (PDB ENTRIES 1NR9 and 1GTT) 2.2 19.65 20279 1085 91.15 0.20374 0.2574 0.23876 0.2678 RANDOM 17.745
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 8.21 -3.97 -4.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.675 r_scangle_it 1.566 r_angle_refined_deg 1.157 r_scbond_it 0.903 r_angle_other_deg 0.746 r_mcangle_it 0.696 r_mcbond_it 0.378 r_symmetry_vdw_other 0.238 r_nbd_other 0.222 r_symmetry_vdw_refined 0.195
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.675 r_scangle_it 1.566 r_angle_refined_deg 1.157 r_scbond_it 0.903 r_angle_other_deg 0.746 r_mcangle_it 0.696 r_mcbond_it 0.378 r_symmetry_vdw_other 0.238 r_nbd_other 0.222 r_symmetry_vdw_refined 0.195 r_nbd_refined 0.183 r_xyhbond_nbd_refined 0.129 r_symmetry_hbond_refined 0.129 r_nbtor_other 0.083 r_chiral_restr 0.066 r_metal_ion_refined 0.031 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3106 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CCP4 phasing