1SAW | pdb_00001saw

X-ray structure of homo sapiens protein FLJ36880

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1NR9	SWISS MODEL (PDB ENTRIES 1NR9 and 1GTT)
experimental model	PDB	1GTT	SWISS MODEL (PDB ENTRIES 1NR9 and 1GTT)

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7.5	293	PEG4000, Magnesium chloride, Na HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K

Crystal Properties
Matthews coefficient	Solvent content
2.57	51.81

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 50.792	α = 90
b = 77.239	β = 90
c = 114.195	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	IMAGE PLATE	MARRESEARCH	MIRRORS	2003-09-19	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	BESSY BEAMLINE 14.2	0.9083	BESSY	14.2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.2	20	91	0.071	0.071	21.2	5.7	21466	21327

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	2.2	2.25	60.8		0.329	0.329	3.4		922

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	SWISS MODEL (PDB ENTRIES 1NR9 and 1GTT)	2.2	19.65	20279	1085	91.15	0.20374	0.26	0.23876	0.27	RANDOM	17.745

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
8.21			-3.97		-4.24

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_1_deg	6.675
r_scangle_it	1.566
r_angle_refined_deg	1.157
r_scbond_it	0.903
r_angle_other_deg	0.746
r_mcangle_it	0.696
r_mcbond_it	0.378
r_symmetry_vdw_other	0.238
r_nbd_other	0.222
r_symmetry_vdw_refined	0.195
r_nbd_refined	0.183
r_xyhbond_nbd_refined	0.129
r_symmetry_hbond_refined	0.129
r_nbtor_other	0.083
r_chiral_restr	0.066
r_metal_ion_refined	0.031
r_bond_refined_d	0.008
r_gen_planes_refined	0.003
r_bond_other_d	0.002
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3106
Nucleic Acid Atoms
Solvent Atoms	128
Heterogen Atoms	4

Software

Software
Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
CCP4	phasing