1NHO
Structural and Functional characterization of a Thioredoxin-like Protein from Methanobacterium thermoautotrophicum
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1mM Mt0807 U-15N, U-13C 50mM phosphate buffer, 100mM NaCL 1mM DSS, 0.06% NaN3, pH 6.0, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50mM NaH2PO4, 100mM NaCL | 6.0 | ambient | 298 | |
2 | 2D TOCSY and HSQC | 1mM Mt0807 U-15N, U-13C 50mM phosphate buffer, 100mM NaCL 1mM DSS, 0.06% NaN3, pH 6.0, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50mM NaH2PO4, 100mM NaCL | 6.0 | ambient | 298 | |
3 | 3D TOCSY HSQC | 1mM Mt0807 U-15N, U-13C 50mM phosphate buffer, 100mM NaCL 1mM DSS, 0.06% NaN3, pH 6.0, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50mM NaH2PO4, 100mM NaCL | 6.0 | ambient | 298 | |
4 | 3D NOESY HSQC | 1mM Mt0807 U-15N, U-13C 50mM phosphate buffer, 100mM NaCL 1mM DSS, 0.06% NaN3, pH 6.0, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50mM NaH2PO4, 100mM NaCL | 6.0 | ambient | 298 | |
5 | 3D HNCACB | 1mM Mt0807 U-15N, U-13C 50mM phosphate buffer, 100mM NaCL 1mM DSS, 0.06% NaN3, pH 6.0, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50mM NaH2PO4, 100mM NaCL | 6.0 | ambient | 298 | |
6 | 3D HNCO | 1mM Mt0807 U-15N, U-13C 50mM phosphate buffer, 100mM NaCL 1mM DSS, 0.06% NaN3, pH 6.0, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50mM NaH2PO4, 100mM NaCL | 6.0 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry and simulated annealing | The structures are based on a total of 997 restraints, 873 are NOE-derived distance constraints, 82 dihedral angle restraints, 42 distance restraints from hydrogen bonds. The structure was refined using refine.inp and Mini_shift_coup.inp. | VNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with acceptable covalent geometry |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 20 |
Representative Model | 8 (lowest energy and secondary structure representing those of chemical shift) |
Additional NMR Experimental Information | |
---|---|
Details | The structure was determined using triple-resonance NMR spectroscopy. |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1C | Varian Inc. |
2 | processing | VNMR | 6.1C + PROC3D extension | Monzavi, H. |
3 | structure solution | X-PLOR (random.inp and dgsa.inp) | 3.851 | Nilges, M., Gronenborn, A.M., Brunger, A.T., Clore, G.M., Kuszewski, J. |
4 | refinement | X-PLOR | 3.851 | Nilges, M., Gronenborn, A.M., Brunger, A.T., Clore, G.M., Kuszewski, J., Garrett, Hancock, Lodi, Vuister, Qin |