1JO1
N7-Guanine Adduct of 2,7-diaminomitosene with DNA
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1.2 mM d(GTG(+G)TATACCAC) duplex in 0.01 M sodium phosphate, 0.1 M NaCl, 0.001M EDTA | 90% H2O/10% D2O | 0.1 M NaCl | 6.8 | ambient | 278 | |
2 | 2D NOESY | 1.2 mM d(GTG(+G)TATACCAC) duplex in 0.01 M sodium phosphate, 0.1 M NaCl, 0.001M EDTA | 100% D2O | 0.1 M NaCl | 6.8 | ambient | 278 | |
3 | P-COSY | 1.2 mM d(GTG(+G)TATACCAC) duplex in 0.01 M sodium phosphate, 0.1 M NaCl, 0.001M EDTA | 100% D2O | 0.1 M NaCl | 6.8 | ambient | 278 | |
4 | HOHAHA | 1.2 mM d(GTG(+G)TATACCAC) duplex in 0.01 M sodium phosphate, 0.1 M NaCl, 0.001M EDTA | 100% D2O | 0.1 M NaCl | 6.8 | ambient | 278 | |
5 | P-COSY | 1.2 mM d(GTG(+G)TATACCAC) duplex in 0.01 M sodium phosphate, 0.1 M NaCl, 0.001M EDTA | 100% D2O | 0.1 M NaCl | 6.8 | ambient | 303 | |
6 | 2D NOESY | 1.2 mM d(GTG(+G)TATACCAC) duplex in 0.01 M sodium phosphate, 0.1 M NaCl, 0.001M EDTA | 100% D2O | 0.1 M NaCl | 6.8 | ambient | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITYPLUS | 500 |
2 | Varian | UNITYPLUS | 600 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry and molecular dynamics | The structure is based on 126 intramolecular DNA constraints, 30 H-bonding constraints, 48 intermolecular drug-DNA constraints, and 48 dihedral constraints | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | lowest number of NOE violations |
Conformers Calculated Total Number | 12 |
Conformers Submitted Total Number | 1 |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2d-NOE buildup studies in H2O and D2O buffers. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1 | Varian Instruments |
2 | data analysis | Felix | 3.0 | MSI |
3 | structure solution | X-PLOR | 3.01 | A. Brunger |
4 | refinement | X-PLOR | 3.01 | A. Brunger |