1JO1

N7-Guanine Adduct of 2,7-diaminomitosene with DNA


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY1.2 mM d(GTG(+G)TATACCAC) duplex in 0.01 M sodium phosphate, 0.1 M NaCl, 0.001M EDTA90% H2O/10% D2O0.1 M NaCl6.8ambient278
22D NOESY1.2 mM d(GTG(+G)TATACCAC) duplex in 0.01 M sodium phosphate, 0.1 M NaCl, 0.001M EDTA100% D2O0.1 M NaCl6.8ambient278
3P-COSY1.2 mM d(GTG(+G)TATACCAC) duplex in 0.01 M sodium phosphate, 0.1 M NaCl, 0.001M EDTA100% D2O0.1 M NaCl6.8ambient278
4HOHAHA1.2 mM d(GTG(+G)TATACCAC) duplex in 0.01 M sodium phosphate, 0.1 M NaCl, 0.001M EDTA100% D2O0.1 M NaCl6.8ambient278
5P-COSY1.2 mM d(GTG(+G)TATACCAC) duplex in 0.01 M sodium phosphate, 0.1 M NaCl, 0.001M EDTA100% D2O0.1 M NaCl6.8ambient303
62D NOESY1.2 mM d(GTG(+G)TATACCAC) duplex in 0.01 M sodium phosphate, 0.1 M NaCl, 0.001M EDTA100% D2O0.1 M NaCl6.8ambient303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianUNITYPLUS500
2VarianUNITYPLUS600
NMR Refinement
MethodDetailsSoftware
distance geometry and molecular dynamicsThe structure is based on 126 intramolecular DNA constraints, 30 H-bonding constraints, 48 intermolecular drug-DNA constraints, and 48 dihedral constraintsVNMR
NMR Ensemble Information
Conformer Selection Criterialowest number of NOE violations
Conformers Calculated Total Number12
Conformers Submitted Total Number1
Additional NMR Experimental Information
DetailsThis structure was determined using standard 2d-NOE buildup studies in H2O and D2O buffers.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR6.1Varian Instruments
2data analysisFelix3.0MSI
3structure solutionX-PLOR3.01A. Brunger
4refinementX-PLOR3.01A. Brunger