1IQT
Solution structure of the C-terminal RNA-binding domain of heterogeneous nuclear ribonucleoprotein D0 (AUF1)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 2mM 15N labeled hnRNP D0 RBD2, 20mM sodium phosphate, 1mM sodium azide, 10mM deuterated DTT, small amounts of DSS | 95% H2O/5% D2O | 0mM | 6.0 | 1 atm | 298 | |
2 | HNHA | 2mM 15N labeled hnRNP D0 RBD2, 20mM sodium phosphate, 1mM sodium azide, 10mM deuterated DTT, small amounts of DSS | 95% H2O/5% D2O | 0mM | 6.0 | 1 atm | 298 | |
3 | 2D NOESY | 2mM hnRNP D0 RBD2, 20mM sodium phosphate, 1mM sodium azide, 10mM deuterated DTT, small amounts of DSS | 95% H2O/5% D2O | 0mM | 6.0 | 1 atm | 298 | |
4 | 2D NOESY | 2mM hnRNP D0 RBD2, 20mM sodium phosphate, 1mM sodium azide, 10mM deuterated DTT, small amounts of DSS | 100% D2O | 0mM | 6.0 | 1 atm | 298 | |
5 | DQF-COSY | 2mM hnRNP D0 RBD2, 20mM sodium phosphate, 1mM sodium azide, 10mM deuterated DTT, small amounts of DSS | 100% D2O | 0mM | 6.0 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Additional NMR Experimental Information | |
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Details | The structure was determined using 2D homonuclear and 3D 15N-edited heteronuclear techniques. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR | 3.8 | Brunger |
2 | data analysis | CAPP/PIPP/STAPP | 4.2.5 | Garret |
3 | processing | XwinNMR | 2.6 | Bruker |
4 | refinement | X-PLOR | 3.8 | Brunger |