Solution structure of the C-terminal RNA-binding domain of heterogeneous nuclear ribonucleoprotein D0 (AUF1)
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_15N-separated_NOESY | 2mM 15N labeled hnRNP D0 RBD2, 20mM sodium phosphate, 1mM sodium azide, 10mM deuterated DTT, small amounts of DSS | 95% H2O/5% D2O | 0mM | 6.0 | 1 atm | 298 | |
| 2 | HNHA | 2mM 15N labeled hnRNP D0 RBD2, 20mM sodium phosphate, 1mM sodium azide, 10mM deuterated DTT, small amounts of DSS | 95% H2O/5% D2O | 0mM | 6.0 | 1 atm | 298 | |
| 3 | 2D NOESY | 2mM hnRNP D0 RBD2, 20mM sodium phosphate, 1mM sodium azide, 10mM deuterated DTT, small amounts of DSS | 95% H2O/5% D2O | 0mM | 6.0 | 1 atm | 298 | |
| 4 | 2D NOESY | 2mM hnRNP D0 RBD2, 20mM sodium phosphate, 1mM sodium azide, 10mM deuterated DTT, small amounts of DSS | 100% D2O | 0mM | 6.0 | 1 atm | 298 | |
| 5 | DQF-COSY | 2mM hnRNP D0 RBD2, 20mM sodium phosphate, 1mM sodium azide, 10mM deuterated DTT, small amounts of DSS | 100% D2O | 0mM | 6.0 | 1 atm | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DRX | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | X-PLOR | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 20 |
| Additional NMR Experimental Information | |
|---|---|
| Details | The structure was determined using 2D homonuclear and 3D 15N-edited heteronuclear techniques. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | X-PLOR | 3.8 | Brunger |
| 2 | data analysis | CAPP/PIPP/STAPP | 4.2.5 | Garret |
| 3 | processing | XwinNMR | 2.6 | Bruker |
| 4 | refinement | X-PLOR | 3.8 | Brunger |














