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PLASMA ALPHA ANTITHROMBIN-III
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ANT PDB ENTRY 2ANT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 CRYSTALS GROWN IN MICROGRAVITY NASA SPACE SHUTTLE MISSION STS-67 20MG/ML LATENT ANTITHROMBIN-III IN 20MM TRIS HCL PH 8.0 CRYSTALLIZED IN 19% PEG 4000, 50 MM NA/K PHOSPHATE PH 6.7, 0.05% AZIDE
Crystal Properties Matthews coefficient Solvent content 2.74 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.41 α = 90 b = 98.31 β = 103.32 c = 90.41 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX7.2 SRS PX7.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.62 20 72 0.048 1.8 23397
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2ANT 2.62 20 1248 72 0.196 0.256 SAME AS 2ANT 53
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 24.8 p_staggered_tor 18.7 p_scangle_it 6.64 p_mcangle_it 4.737 p_scbond_it 4.596 p_planar_tor 4.4 p_mcbond_it 2.722 p_multtor_nbd 0.193 p_chiral_restr 0.19 p_singtor_nbd 0.146
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 24.8 p_staggered_tor 18.7 p_scangle_it 6.64 p_mcangle_it 4.737 p_scbond_it 4.596 p_planar_tor 4.4 p_mcbond_it 2.722 p_multtor_nbd 0.193 p_chiral_restr 0.19 p_singtor_nbd 0.146 p_xyhbond_nbd 0.123 p_plane_restr 0.0281 p_angle_d 0.023 p_planar_d 0.016 p_bond_d 0.007 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6535 Nucleic Acid Atoms Solvent Atoms 70 Heterogen Atoms 298
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing