1ZRY
NMR structural analysis of apo chicken liver bile acid binding protein
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D TOCSY, NOESY | 1 mM chicken liver bile acid binding protein 15N, 13C, 20 mM phosphate buffer Na | 90% H2O/10% D2O | 20mM | 7.0 | ambient | 298 | |
2 | 2D 1H-15N HSQC, 3D 1H-15N HSQC-TOCSY,1H-15N HSQC-NOESY, 3D HNHA | 1 mM chicken liver bile acid binding protein 15N, 13C, 20 mM phosphate buffer Na | 90% H2O/10% D2O | 20mM | 7.0 | ambient | 298 | |
3 | 3D 1H-15N-13C HNCA, HN(CO)CA,HNCO,CBCANH, CBCA(CO)NH | 1 mM chicken liver bile acid binding protein 15N, 13C, 20 mM phosphate buffer Na | 90% H2O/10% D2O | 20mM | 7.0 | ambient | 298 | |
4 | 3D 1H-15N-13C NOESY optimised for aromatic and aliphatic residues | 1 mM chicken liver bile acid binding protein 15N, 13C, 20 mM phosphate buffer Na | D2O | 20mM | 7.0 | ambient | 298 | |
5 | 3D HACACO, (H)CCH-COSY, (H)CCH-TOCSY, H(C)CH-COSY, H(C)CHTOCSY | 1 mM chicken liver bile acid binding protein 15N, 13C, 20 mM phosphate buffer Na | D2O | 20mM | 7.0 | ambient | 298 | |
6 | 2D TOCSY, NOESY,2D 1H-15N HSQC, 3D 1H-15N HSQC-TOCSY,1H-15N HSQC-NOESY, 3D HNHA | 1 mM chicken liver bile acid binding protein 15N, 13C, 20 mM phosphate buffer Na | 90% H2O/10% D2O | 20 mM | 5.6 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Bruker | AVANCE | 600 |
3 | Bruker | AVANCE | 700 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics, minimization | the structures are based on a set of 1000 non redundant NOEs ; 26 distance restraints for 13 backbone hydrogen bonds; 48 phi angle constraints | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.5 | Bruker software |
2 | data analysis | NMRPipe | 2.2 | Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) J Biomol NMR 6, 277-29 |
3 | data analysis | NMRView | 5 | Johnson, B.A. and Blevins, R.A. J. Biomolecular NMR 4, 603 1994 |
4 | structure solution | DYANA | 1.4 | Guntert, P., Mumenthaler, C., and Wuthrich, K. (1997) J Mol Biol 273, 283-298 |
5 | refinement | Discover | 97 | Molecular Simulations, San diego, CA |