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 1YG0 | pdb_00001yg0

Solution structure of apo-CopP from Helicobacter pylori


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY2mM HpCopP U-15N, 13C; 50mM phosphate buffer, 10mM DTT, 500mM NaCl NA; 90% H2O, 10% D2O90% H2O/10% D2O500mM NaCl, 10mM DTT7ambient303
23D_13C-separated_NOESY2mM HpCopP U-15N, 13C; 50mM phosphate buffer, 10mM DTT, 500mM NaCl NA; 90% H2O, 10% D2O90% H2O/10% D2O500mM NaCl, 10mM DTT7ambient303
33D_15N-separated_NOESY2mM HpCopP U-15N, 13C; 50mM phosphate buffer, 10mM DTT, 500mM NaCl NA; 90% H2O, 10% D2O90% H2O/10% D2O500mM NaCl, 10mM DTT7ambient303
4HNHA2mM HpCopP U-15N, 13C; 50mM phosphate buffer, 10mM DTT, 500mM NaCl NA; 90% H2O, 10% D2O90% H2O/10% D2O500mM NaCl, 10mM DTT7ambient303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
simulated annealing, torsion angle dynamicsThe structures are based on a total of 1250 restraints, 1115 are NOE-derived distance constraints, 95 dihedral angle restraints, 40 distance restraints from hydrogen bonds.CNS
NMR Ensemble Information
Conformer Selection Criteria
Conformers Calculated Total Number
Conformers Submitted Total Number1
Representative Model (minimized average structure)
Additional NMR Experimental Information
DetailsThis structure was determined using standard 2D and 3D techniques.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNS1.1Brucker
2structure solutionCNS1.1Brunger
3data analysisNMRPipe5.4Delaglio
4collectionXwinNMR3.5Brucker
5refinementX-PLOR3.8Brucker