1YEL
Structure of the hypothetical Arabidopsis thaliana protein At1g16640.1
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 0.8 mM At1g16640 U-15N,13C, 20 mM PO4, 50 mM NaCl, 90% H2O, 10% D2O | 90% H2O/10% D2O | 70 mM | 7.0 | ambient | 298 | |
2 | 3D_15N-separated_NOESY | 0.8 mM At1g16640 U-15N,13C, 20 mM PO4, 50 mM NaCl, 90% H2O, 10% D2O | 90% H2O/10% D2O | 70 mM | 7.0 | ambient | 298 | |
3 | 3D 13C-separated NOESY (aromatic) | 0.8 mM At1g16640 U-15N,13C, 20 mM PO4, 50 mM NaCl, 90% H2O, 10% D2O | 90% H2O/10% D2O | 70 mM | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
Automated methods were used for backbone chemical shift assignment and iterative NOE refinement. Final structures were obtained by molecular dynamics in explicit solvent. | Structures are based on a total of 1294 NOE restraints (241 intra, 301 sequential, 193 medium, and 559 long range), and 144 phi and psi dihedral angle constraints. | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
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Details | All triple-resonance and NOESY spectra were acquired using a cryogenic probe. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.5 | Bruker Biospin |
2 | processing | NMRPipe | 2004 | Frank Delaglio |
3 | data analysis | SPSCAN | Ralf Glaser | |
4 | data analysis | XEASY | 1.3 | |
5 | data analysis | GARANT | 2.1 | |
6 | structure solution | CYANA | 1.0.6 | Peter Guntert |
7 | refinement | X-PLOR | NIH | G. Marius Clore |