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HORSE LIVER ALCOHOL DEHYDROGENASE APOENZYME
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8ADH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 8.4 278 50 mM Tris-HCl, 25% methylpentanediol, pH 8.4, MICRODIALYSIS, temperature 278K
Crystal Properties Matthews coefficient Solvent content 2.36 47.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.78 α = 90 b = 74.29 β = 90 c = 181.25 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 20.2 71.9 0.075 11.5 5.66 36732 1 1 25.468
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.65 58 0.211 4.7 5.74 2918
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 8ADH 1.59 20.2 1 35539 1143 71.92 0.2011 0.2011 0.19946 0.2073 0.25593 0.2189 RANDOM 35.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 1.46 -2.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.304 r_dihedral_angle_4_deg 20.041 r_sphericity_free 17.858 r_dihedral_angle_3_deg 14.379 r_sphericity_bonded 8.267 r_dihedral_angle_1_deg 5.908 r_scangle_it 4.532 r_scbond_it 3.249 r_mcangle_it 2.218 r_rigid_bond_restr 1.671
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.304 r_dihedral_angle_4_deg 20.041 r_sphericity_free 17.858 r_dihedral_angle_3_deg 14.379 r_sphericity_bonded 8.267 r_dihedral_angle_1_deg 5.908 r_scangle_it 4.532 r_scbond_it 3.249 r_mcangle_it 2.218 r_rigid_bond_restr 1.671 r_angle_refined_deg 1.529 r_mcbond_it 1.493 r_nbtor_refined 0.308 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.153 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.103 r_symmetry_hbond_refined 0.1 r_bond_refined_d 0.014 r_metal_ion_refined 0.011 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2785 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling