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Crystal structure of yeast FSH1/YHR049W, a member of the serine hydrolase family
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 291 27% PEG 4K, 0.1M MES, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.6 52.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.133 α = 102.85 b = 53.329 β = 90.04 c = 64.271 γ = 112.47
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-09-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.9795 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 94.8 0.047 14.6 1.5 87556 57009 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 91.2 0.165 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 20 54126 2873 94.5 0.16746 0.16555 0.1665 0.20217 0.1654 RANDOM 19.697
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.56 0.18 -0.04 0.99 -0.39 -0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.863 r_dihedral_angle_4_deg 17.767 r_dihedral_angle_3_deg 12.056 r_dihedral_angle_1_deg 5.071 r_scangle_it 3.358 r_scbond_it 2.06 r_angle_refined_deg 1.283 r_mcangle_it 1.26 r_mcbond_it 0.797 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.863 r_dihedral_angle_4_deg 17.767 r_dihedral_angle_3_deg 12.056 r_dihedral_angle_1_deg 5.071 r_scangle_it 3.358 r_scbond_it 2.06 r_angle_refined_deg 1.283 r_mcangle_it 1.26 r_mcbond_it 0.797 r_nbtor_refined 0.306 r_nbd_refined 0.221 r_symmetry_vdw_refined 0.152 r_xyhbond_nbd_refined 0.136 r_symmetry_hbond_refined 0.125 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3769 Nucleic Acid Atoms Solvent Atoms 936 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHARP phasing