1XX8
NMR Structure of the W24A Mutant of the Hyperthermophile Sac7d Protein
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | DQF-COSY | 5 mM Sac7d, 90% H2O, 10% D2O | 90% H2O/10% D2O | 4.5 | ambient | 303 | ||
2 | 2D TOCSY | 5 mM Sac7d, 90% H2O, 10% D2O | 90% H2O/10% D2O | 4.5 | ambient | 303 | ||
3 | 2D NOESY | 5 mM Sac7d, 90% H2O, 10% D2O | 90% H2O/10% D2O | 4.5 | ambient | 303 | ||
4 | HNHA | 5 mM Sac7d, 90% H2O, 10% D2O | 90% H2O/10% D2O | 4.5 | ambient | 303 | ||
5 | 2D_HSQC_IPAP | 5 mM Sac7d, 90% H2O, 10% D2O | 90% H2O/10% D2O | 4.5 | ambient | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
NMR Refinement | ||
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Method | Details | Software |
Simulated annealing using cartesion and torsion angle dynamics | NOE assignments, distance restraint calibration, and initial structures were made using ARIA 1.2 with 370 NOE volumes. Final structure refinement was done using CNS 1.1 with 262 unambiguous distance restraints, 13 H-bonds, 48 HNHA coupling constants, and 59 NH residual dipolar couplings. | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 11 |
Representative Model | 1 (minimized average structure) |
Additional NMR Experimental Information | |
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Details | THIS ENTRY CONSISTS OF 11 MODELS, INCLUDING ONE ENERGY-MINIMIZED AVERAGE STRUCTURE FOLLOWED BY AN ENSEMBLE OF THE 10 BEST NMR STRUCTURES. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1C | Varian |
2 | processing | Felix | 2000 | BioSym |
3 | data analysis | NMRView | 5.2.2 | Johnson |
4 | structure solution | ARIA | 1.2 | Linge, Nilges |
5 | refinement | CNS | 1.1 | Brunger, Clore |