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Crystal structure of CIB1, an EF-hand, integrin and kinase-binding protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 291 20 mM Bis-Tris-propane (BTP), 300 mM calcium acetate, 18% PEG 3350, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.6 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.663 α = 90 b = 51.009 β = 103.12 c = 77.214 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-06-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 40 95.4 0.058 32 7.3 29442 25.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.99 2.07 81 0.023 5.8 6.2 2370
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.99 40.32 26651 1430 95.14 0.21437 0.214 0.21209 0.2157 0.25672 0.2566 RANDOM 38.068
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 0.01 0.03 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.124 r_dihedral_angle_4_deg 18.427 r_dihedral_angle_3_deg 15.468 r_dihedral_angle_1_deg 5.256 r_scangle_it 1.974 r_scbond_it 1.274 r_angle_refined_deg 1.05 r_mcangle_it 0.875 r_angle_other_deg 0.785 r_mcbond_it 0.512
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.124 r_dihedral_angle_4_deg 18.427 r_dihedral_angle_3_deg 15.468 r_dihedral_angle_1_deg 5.256 r_scangle_it 1.974 r_scbond_it 1.274 r_angle_refined_deg 1.05 r_mcangle_it 0.875 r_angle_other_deg 0.785 r_mcbond_it 0.512 r_xyhbond_nbd_refined 0.256 r_symmetry_hbond_refined 0.254 r_nbd_refined 0.219 r_symmetry_vdw_refined 0.209 r_symmetry_vdw_other 0.187 r_nbd_other 0.175 r_nbtor_refined 0.174 r_xyhbond_nbd_other 0.121 r_metal_ion_refined 0.108 r_mcbond_other 0.104 r_nbtor_other 0.082 r_chiral_restr 0.06 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2781 Nucleic Acid Atoms Solvent Atoms 397 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement MAR345 data collection SCALEPACK data scaling SOLVE phasing