1XCE
Helica Structure of DNA by Design: The T(GGGG)T Hexad Alignment
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | DQF-COSY | synthesized by solid phase phosphoramidite methods, phosphate buffer pH 6.8 | H2O | 100 mM NaCl | 6.8 | normal | 293 | |
2 | 2D TOCSY | synthesized by solid phase phosphoramidite methods, phosphate buffer pH 6.8 | H2O | 100 mM NaCl | 6.8 | normal | 293 | |
3 | 2D NOESY | synthesized by solid phase phosphoramidite methods, phosphate buffer pH 6.8 | H2O | 100 mM NaCl | 6.8 | normal | 293 | |
4 | 1H,15N HSQC | synthesized by solid phase phosphoramidite methods, phosphate buffer pH 6.8 | H2O | 100 mM NaCl | 6.8 | normal | 273 | |
5 | 31P,1H HETCOR | synthesized by solid phase phosphoramidite methods, phosphate buffer pH 6.8 | H2O | 100 mM NaCl | 6.8 | normal | 293 | |
6 | JR-NOESY | synthesized by solid phase phosphoramidite methods, phosphate buffer pH 6.8 | H2O | 100 mM NaCl | 6.8 | normal | 273 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing, torsion angle dynamics, molecular dynamics | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 15 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | The structure was determine using standard and non-standard homo- and heteronuclear NMR techniques |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | 2.1 | Brunger |
2 | refinement | XPLOR-NIH | 2.9.7 | Brunger/Schwieters |