1WQB
Three-dimensional Solution Strucutre of Aptotoxin VII, from the venom of a Trap-door Spider
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 10mM Aptotoxin; 90% H2O, 10% D2O | 90% H2O/10% D2O | 0 | 3.5 | ambient | 288 | |
2 | DQF-COSY | 10mM Aptotoxin; 90% H2O, 10% D2O | 90% H2O/10% D2O | 0 | 3.5 | ambient | 288 | |
3 | 2D TOCSY | 10mM Aptotoxin; 90% H2O, 10% D2O | 90% H2O/10% D2O | 0 | 3.5 | ambient | 288 | |
4 | 2D NOESY | 10mM Aptotoxin; D2O | D2O | 0 | 3.5 | ambient | 288 | |
5 | 2D TOCSY | 10mM Aptotoxin; D2O | D2O | 0 | 3.5 | ambient | 288 | |
6 | PE-COSY | 10mM Aptotoxin; D2O | D2O | 0 | 3.5 | ambient | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX | 500 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry simulated annealing molecular dynamics | The structures are based on a total of 392 restraints, 358 are NOE-derived distance constraints, 19 dihedral angle restraints, 15 distance restraints from hydrogen bonds and disulfide bonds. | UXNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 18 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2D homonuclear techniques. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | UXNMR | 96 | Bruker |
2 | processing | UXNMR | 96 | Bruker |
3 | refinement | X-PLOR | 3.1 | |
4 | structure solution | X-PLOR | 3.1 | Brunger |