1WBB

Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38A mutant, in complex with a G.T mismatch


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.525 MM HEPES(7.5), 300 MM NACL, 10 MM MGCL2, 14 % PEG 6000., pH 7.50
Crystal Properties
Matthews coefficientSolvent content
2.656.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 89.553α = 90
b = 92.494β = 90
c = 261.264γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDSAGITAL FOCUSSING GE (220) AND MULTILAYER.2002-11-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-1ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.52099.30.119.813.127528953.02
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.5998.30.721.483.06

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1E3M2.52073763145299.30.2210.220.27SAME AS FOR ENTRY 1E3M18.08
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.1694.915-2.746
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.067
r_scangle_it1.763
r_angle_refined_deg1.225
r_scbond_it1.041
r_angle_other_deg0.799
r_mcangle_it0.673
r_mcbond_it0.352
r_symmetry_vdw_refined0.22
r_nbd_other0.216
r_symmetry_vdw_other0.216
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.067
r_scangle_it1.763
r_angle_refined_deg1.225
r_scbond_it1.041
r_angle_other_deg0.799
r_mcangle_it0.673
r_mcbond_it0.352
r_symmetry_vdw_refined0.22
r_nbd_other0.216
r_symmetry_vdw_other0.216
r_nbd_refined0.19
r_symmetry_hbond_refined0.162
r_xyhbond_nbd_refined0.152
r_nbtor_other0.084
r_chiral_restr0.064
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12163
Nucleic Acid Atoms714
Solvent Atoms285
Heterogen Atoms28

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling