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Crystal structure of Phosphoribosylformylglycinamidine synthase II (TM1246) from Thermotoga maritima at 2.15 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 8 293 30.00% PEG 200, 0.10M Tris pH 8.0, 7% NP_PEG 4000 , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.14 41.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.775 α = 90 b = 72.689 β = 90 c = 128.418 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2003-12-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.0035, 0.9796 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 72.69 90.8 0.089 10.2 3.2 28272 38.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.15 2.21 56.8 0.554 1.3 1.9 1292
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.15 63.26 26869 1368 90.59 0.18974 0.18645 0.1895 0.25423 0.2561 RANDOM 24.896
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -1.52 1.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.563 r_dihedral_angle_4_deg 17.362 r_dihedral_angle_3_deg 16.934 r_scangle_it 7.269 r_dihedral_angle_1_deg 6.044 r_scbond_it 5.423 r_mcangle_it 2.597 r_mcbond_it 1.758 r_angle_refined_deg 1.315 r_symmetry_vdw_refined 0.204
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.563 r_dihedral_angle_4_deg 17.362 r_dihedral_angle_3_deg 16.934 r_scangle_it 7.269 r_dihedral_angle_1_deg 6.044 r_scbond_it 5.423 r_mcangle_it 2.597 r_mcbond_it 1.758 r_angle_refined_deg 1.315 r_symmetry_vdw_refined 0.204 r_nbd_refined 0.201 r_symmetry_hbond_refined 0.194 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.089 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4444 Nucleic Acid Atoms Solvent Atoms 221 Heterogen Atoms 1
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing RESOLVE model building REFMAC refinement CCP4 data scaling RESOLVE phasing