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High affinity fucose binding of Pseudomonas aeruginosa lectin II: 1.0 A crystal structure of the complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other PSEUDOMONAS AERUGINOSA LECTIN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 TRIS HCL 0.1M, PH8.5, 1.75 M AMMONIUM SULFATE, pH 8.50
Crystal Properties Matthews coefficient Solvent content 1.87 31.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.735 α = 90 b = 72.827 β = 94.21 c = 54.747 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR 2002-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1 29.88 97.7 0.063 5 3.3 216831
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1 1.04 94.3 0.23 2.8 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PSEUDOMONAS AERUGINOSA LECTIN 1 30 212499 4332 95.8 0.1146 0.1236 0.1351 0.142 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 27 2991.64 4024.72
RMS Deviations Key Refinement Restraint Deviation s_anti_bump_dis_restr 0.102 s_non_zero_chiral_vol 0.098 s_zero_chiral_vol 0.089 s_similar_adp_cmpnt 0.035 s_from_restr_planes 0.0342 s_angle_d 0.029 s_bond_d 0.014 s_rigid_bond_adp_cmpnt 0.006 s_similar_dist s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3308 Nucleic Acid Atoms Solvent Atoms 682 Heterogen Atoms 62
Software Software Software Name Purpose SHELXL-97 refinement DENZO data reduction SCALA data scaling AMoRE phasing ACORN phasing SHELX phasing