1UV4

Native Bacillus subtilis Arabinanase Arb43A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
180.2M MGCL2, 15% PEG 3350 5MM CACL2, 10 MM TRIS PH 8.0, 25% ETHYLENE GLYCOL
Crystal Properties
Matthews coefficientSolvent content
2.141.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48.628α = 90
b = 46.153β = 98.96
c = 57.322γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMIRROR2002-04-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX14.1SRSPX14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.528.3910.07118.2440400
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.5874.50.2084.33

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1GYD1.52034795184090.80.1690.1670.199RANDOM13.27
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.60.08-0.13-0.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.341
r_scangle_it3.267
r_scbond_it2.246
r_angle_refined_deg1.668
r_mcangle_it1.401
r_angle_other_deg1.388
r_mcbond_it0.86
r_xyhbond_nbd_refined0.347
r_symmetry_vdw_other0.287
r_nbd_other0.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.341
r_scangle_it3.267
r_scbond_it2.246
r_angle_refined_deg1.668
r_mcangle_it1.401
r_angle_other_deg1.388
r_mcbond_it0.86
r_xyhbond_nbd_refined0.347
r_symmetry_vdw_other0.287
r_nbd_other0.26
r_symmetry_hbond_refined0.204
r_nbd_refined0.202
r_chiral_restr0.139
r_symmetry_vdw_refined0.109
r_metal_ion_refined0.101
r_nbtor_other0.088
r_bond_refined_d0.015
r_gen_planes_refined0.008
r_gen_planes_other0.003
r_bond_other_d0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2263
Nucleic Acid Atoms
Solvent Atoms302
Heterogen Atoms18

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing