☰ Navigation Tabs
Deacetoxycephalosporin C synthase complexed with deacetoxycephalosporin C
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RXF PDB ENTRY 1RXF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 1.75M AMMONIUM SULPHATE, 5MM 2-OXOGLUTARATE,0.1M HEPESPH7.5, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.6 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.6 α = 90 b = 106.6 β = 90 c = 74 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 25.4 91 0.046 4.8 31415
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 99.5 0.186
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1RXF 1.7 25.4 26307 1392 100 0.206 0.204 0.2129 0.242 0.248 RANDOM 30.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.8 -0.4 -0.8 1.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.432 r_scangle_it 7.616 r_scbond_it 5.314 r_mcangle_it 4.32 r_mcbond_it 2.909 r_angle_refined_deg 2.365 r_angle_other_deg 1.036 r_symmetry_hbond_refined 0.774 r_symmetry_vdw_other 0.312 r_symmetry_vdw_refined 0.271
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.432 r_scangle_it 7.616 r_scbond_it 5.314 r_mcangle_it 4.32 r_mcbond_it 2.909 r_angle_refined_deg 2.365 r_angle_other_deg 1.036 r_symmetry_hbond_refined 0.774 r_symmetry_vdw_other 0.312 r_symmetry_vdw_refined 0.271 r_nbd_other 0.263 r_xyhbond_nbd_refined 0.262 r_nbd_refined 0.232 r_metal_ion_refined 0.129 r_chiral_restr 0.125 r_nbtor_other 0.094 r_bond_refined_d 0.025 r_gen_planes_refined 0.011 r_bond_other_d 0.004 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1994 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling