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Crystal Structure of Human Alcohol Dehydrogenase Gamma-2-Gamma-2 Isoform Complexed with N-1-Methylheptylformamide Determined to 1.45 Angstrom Resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HT0 PDB ENTRY 1HT0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 277 10mg/ml enzyme, 4mM NAD+, 50mM Tris-HCl, and 17-19% PEG 6000, pH 9.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.1 40.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.361 α = 90 b = 67.125 β = 103.75 c = 92.725 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12B NSLS X12B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 29.36 62.8 0.052 17.2 3.8 110343 110343
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.488 98.96 0.432 3.1 8042
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HT0 1.45 29.36 110343 110343 5964 99.59 0.18533 0.18533 0.18397 0.1826 0.21069 0.21 RANDOM 26.028
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.33 0.38 2.35 -0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.202 r_scangle_it 4.551 r_scbond_it 2.801 r_mcangle_it 1.863 r_angle_refined_deg 1.842 r_mcbond_it 1.163 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.214 r_symmetry_hbond_refined 0.157 r_xyhbond_nbd_refined 0.154
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.202 r_scangle_it 4.551 r_scbond_it 2.801 r_mcangle_it 1.863 r_angle_refined_deg 1.842 r_mcbond_it 1.163 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.214 r_symmetry_hbond_refined 0.157 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.114 r_metal_ion_refined 0.034 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5556 Nucleic Acid Atoms Solvent Atoms 819 Heterogen Atoms 114
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CCP4 data scaling AMoRE phasing